Difference between revisions of "Release Job UM11.0"

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  +
==Overview==
  +
  +
{| border="1" style="background-color:white" cellpadding="10"
  +
|-
  +
|| Free-running || XCE/F/S: '''<code>u-ay770</code>''' || Monsoon2: '''<code>u-bb055</code>''' || NEXCS: '''<code>u-bb056</code>''' || ARCHER: '''<code>u-ba915</code>'''
  +
|-
  +
|| Run-time (per model month) || ~1 hour 10 minutes (XCS) || ~1 hour 10 minutes || ~1 hour 10 minutes || ~1 hour 20 minutes
  +
|-
  +
|| Cycling || P1M in PT1H40M (XCS) || P1M in PT1H40M || P1M in PT1H40M <br/> This could be changed to take advantage of the longer queues on NEXCS. || P1M in PT1H40M <br/> This could be changed to take advantage of the longer queues on ARCHER.
  +
|-
  +
|| Estimated cost || || 168 node-hours/model year || 168 node-hours/model year <br/> or 91 kAU/model year equivalent || 91 kAU/model year
  +
|-
  +
|| Decomposition || 18EW x 24NS on 12 nodes (XCS: 36PPN) || 18EW x 24NS on 12 nodes (36PPN) || 18EW x 24NS on 12 nodes (36PPN) || 24EW x 15NS on 15 nodes (24PPN)
  +
|-
  +
|| Storage Requirements<br>(current STASH settings) || 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps) || 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps)<br>MASS costs: £2.01 per model year || 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps) <br/>copied to a JASMIN GWS as the model runs || 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps) <br/>copied to the <code>/nerc</code> disk and a JASMIN GWS as the model runs
  +
|-
  +
|}
  +
  +
<br>__TOC__
  +
 
= UKCA Release Job - UM11.0 - Free Running =
 
= UKCA Release Job - UM11.0 - Free Running =
 
==UM11.0 GA7.1 + UKCA Strattrop GLOMAP (N96L85) TS2000 ==
  
==UM11.0 GA7.1 + UKCA Strattrop GLOMAP (N96L85) TS2000 ==
Line 4: Line 24:
 
----
  
----
 
== Suite -id ==
  
== Suite -id ==
  +
−
Met Office (XCE/F/S): '''[https://code.metoffice.gov.uk/trac/roses-u/intertrac/source:/a/y/7/7/0 u-ay770]'''<br/>
  
  +
* Met Office (XCE/F/S): '''[https://code.metoffice.gov.uk/trac/roses-u/intertrac/source:/a/y/7/7/0 u-ay770]'''
−
Monsoon2: <br/>
  
  +
* Monsoon2: '''[https://code.metoffice.gov.uk/trac/roses-u/intertrac/source:/b/b/0/5/5 u-bb055]'''
−
ARCHER:
  
  +
* NEXCS: '''[https://code.metoffice.gov.uk/trac/roses-u/intertrac/source:/b/b/0/5/6 u-bb056]'''
  +
* ARCHER: '''[https://code.metoffice.gov.uk/trac/roses-u/intertrac/source:/b/a/9/1/5 u-ba915]'''
  +
  +
'''Remember to always COPY these suites to a new one that you own, rather than checking them out.''' This will prevent you accidentally over-writing the settings in the original suite.
   
 
== Base/ inherited configuration ==
  
== Base/ inherited configuration ==
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|-
  
|-
 
|| [https://code.metoffice.gov.uk/trac/um/log/main/branches/dev/dev/mohitdalvi/vn11.0_ukca_ageair_and_stashm branches/dev/dev/mohitdalvi/vn11.0_ukca_ageair_and_stashm] || Fixes STASH definition of age-of-air pressure-level diagnostic <br/> '''Not required for build (fcm_make_um), only replaces runtime STASHmaster''' <br/> (specified in app/um/rose-app.conf=>[file:STASHmaster] section) || Yes
  
|| [https://code.metoffice.gov.uk/trac/um/log/main/branches/dev/dev/mohitdalvi/vn11.0_ukca_ageair_and_stashm branches/dev/dev/mohitdalvi/vn11.0_ukca_ageair_and_stashm] || Fixes STASH definition of age-of-air pressure-level diagnostic <br/> '''Not required for build (fcm_make_um), only replaces runtime STASHmaster''' <br/> (specified in app/um/rose-app.conf=>[file:STASHmaster] section) || Yes
  +
|-
  +
|| [https://code.metoffice.gov.uk/trac/um/log/main/branches/dev/dev/mohitdalvi/vn11.0_ukca_fix_o3_ste branches/dev/dev/mohitdalvi/vn11.0_ukca_fix_o3_ste] || Fixes a bug in derivation of tropopause in UKCA and the calculation of the Ozone STE diagnostic || No
 
|}
  
|}
   
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== Initialisation ==
  
== Initialisation ==
   
−
The suite (meteorological, aerochem variables) will initialise from a dump produced at the end of a 20-year spin-up run of the previous GA7.1+Strattrop AMIP run ''u-au917'' - ''/data/d05/hadzm/dumps/au917a.da20080901_00''<br/>
 +
The suite (meteorological, aerochem variables) will initialise from a dump produced at the end of a 20-year spin-up run of the previous GA7.1+Strattrop AMIP run ''u-au917'' <br/>
−
Monsoon:''/projects/ukca-meto/hadzm/dumps_ukmo/au9170a.da20080901_00''<br/>
 +
* XCS-R ''/data/d05/hadzm/dumps/au917a.da20080901_00''
  +
* Monsoon2/NEXCS:''/projects/ukca-admin/inputs/initial/N96eL85/au917a.da20080901_00''
−
The path to this is set in the file(s): ''u-ay770/site/meto_cray.rc'',''u-ay770/site/MONSOON.rc'' as variable '''AINITIAL'''.
  
  +
* ARCHER: ''/work/n02/n02/ukca/initial/N96eL85/au917a.da20080901_00''
  +
  +
The path to this is set in the file(s): ''site/meto_cray.rc'', ''site/MONSOON.rc'', or ''site/archer.rc'' as variable '''AINITIAL'''. You can look in the site files for other specific changes.
   
 
== Forcing data ==
  
== Forcing data ==
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=== Emissions ===
  
=== Emissions ===
   
−
Emissions for aerosol and chemical species (except biogenic) are prescribed as monthly cyclic climatologies around Year2000 by averaging data for 1995-2004 from the CMIP6 [https://code.metoffice.gov.uk/trac/ancil/wiki/CMIP6/ForcingData/AerosolChemistryEmissions historical] emissions developed for UKESM1. Script used was [attachment:make_clim_emiss.py][[br]]
+
Emissions for aerosol and chemical species (except biogenic) are prescribed as monthly cyclic climatologies around Year2000 by averaging data for 1995-2004 from the CMIP6 [https://code.metoffice.gov.uk/trac/ancil/wiki/CMIP6/ForcingData/AerosolChemistryEmissions historical] emissions developed for UKESM1. Script used was make_clim_emiss.py.
   
 
Biogenic emissions used are those originally [http://www.ukca.ac.uk/wiki/index.php/Emissions_for_ACSIS developed] for the NERC ACSIS project and represent datasets pertaining to 1990s,2000s for different species.
  
Biogenic emissions used are those originally [http://www.ukca.ac.uk/wiki/index.php/Emissions_for_ACSIS developed] for the NERC ACSIS project and represent datasets pertaining to 1990s,2000s for different species.
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=== Sea surface temperature and sea ice concentrations ===
  
=== Sea surface temperature and sea ice concentrations ===
   
−
The SST and Sice values are also prescribed as monthly climatologies for 2000 derived from the historical data [https://code.metoffice.gov.uk/trac/ancil/wiki/CMIP6/ForcingData/SstSeaIce generated] for CMIP6 Atmos-only simulations.
+
The SST and Sice values are also prescribed as monthly climatologies for 2000 created by averaging over 1995-2004 the timeseries data [https://code.metoffice.gov.uk/trac/ancil/wiki/CMIP6/ForcingData/SstSeaIce generated] for CMIP6 Atmos-only simulations.
   
 
=== GHG and Trace Gas Concentrations ===
  
=== GHG and Trace Gas Concentrations ===
   
 
* These have been specified as values averaged over 1995-2004 from the historical GHG forcing data [https://code.metoffice.gov.uk/trac/ancil/wiki/CMIP6/ForcingData/GreenhouseGases prepared] for CMIP6.
  
* These have been specified as values averaged over 1995-2004 from the historical GHG forcing data [https://code.metoffice.gov.uk/trac/ancil/wiki/CMIP6/ForcingData/GreenhouseGases prepared] for CMIP6.
−
* This was done by manually averaging data for above years from the files {{{/projects/ancils/cmip6/ancils/any/timeseries_1850-2014/cmip6/global_ghg_cmip6.conf}}} and {{{trgas_rcp_historical.dat}}} respectively for the Radiation GHG inputs and UKCA trace gas specification.
+
* This was done by manually averaging data for above years from the files {{{/projects/ancils/cmip6/ancils/any/timeseries_1850-2014/cmip6/global_ghg_cmip6.conf}}} and {{{trgas_rcp_historical.dat}}} respectively for the Radiation GHG inputs and UKCA trace gas specification.
−  
−
'''Review only''' The timeseries data imported as spreadsheet and the calculation of climatologies can be found in {{{/home/h02/hadzm/roses/UKCA_nl_files/cmip6_ghg_climy2k.xlsx }}} and {{{/home/h02/hadzm/roses/UKCA_nl_files/trgas_rcp_hist_y2k.xlsx }}}
  
   
 
== Critical Model setup / Namelist settings ==
  
== Critical Model setup / Namelist settings ==
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* Panel: ''um => namelist => Reconfiguration and Ancil control => Configure ancil and dump fields''
  
* Panel: ''um => namelist => Reconfiguration and Ancil control => Configure ancil and dump fields''
 
* Look for initialisation of items:
 
* Look for initialisation of items:
−
* stashcode=24 (SST), ancilfilename=''$SST_SICE_ANCIL/sst_clim_mon_2000_n96e.anc''
 +
stashcode=24 (SST), ancilfilename='$SST_SICE_ANCIL/sst_clim_mon_2000_n96e.anc'
−
* stashcodes=31,32 (sea-ice), ancilfilename=''$SST_SICE_ANCIL/sice_clim_mon_2000_n96e.anc''
 +
stashcodes=31,32 (sea-ice), ancilfilename='$SST_SICE_ANCIL/sice_clim_mon_2000_n96e.anc'
  +
where:
−
* ''site/meto_cray.rc'': SST_SICE_CLIM = ''/data/d05/hadzm/ancil/n96e/cmip6/sstice/clim_2000''
  
−
* ''site/MONSOON.rc'': SST_SICE_CLIM = ''/projects/ukca-meto/hadzm/ancil/n96e/cmip6/sstice/clim_2000''
 +
site/meto_cray.rc: SST_SICE_ANCIL = '/data/d05/hadzm/ancil/n96e/cmip6/sstice/clim_2000'
  +
site/MONSOON.rc: SST_SICE_ANCIL = '/projects/ukca-meto/hadzm/ancil/n96e/cmip6/sstice/clim_2000'
  +
site/archer.rc: SST_SICE_ANCIL = '/work/n02/n02/ukca/ancil/n96e/cmip6/sstice/clim_2000'
   
 
==== RUN_Radiation GHG values ====
  
==== RUN_Radiation GHG values ====
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==== RUN_UKCA settings ====
  
==== RUN_UKCA settings ====
 
{| border='1' cellpadding='2'
  
{| border='1' cellpadding='2'
−
! Item || Value || Remarks
+
! Item || Value || Remarks || Item || Value || Remarks
 
|-
  
|-
−
|| biom_aer_ems_scaling || 2.0
 +
|| biom_aer_ems_scaling || 2.0 || || chem_timestep || 3600 ||
−
|-
 
−
|| chem_timestep || 3600 ||
 
 
|-
  
|-
−
|| dir_strat_aer || '/home/d05/hadzm/job_files/SAD' ||
+
|| dir_strat_aer || '/home/d05/hadzm/job_files/SAD' <br/> '/work/n02/n02/ukca/job_files/SAD' (ARCHER) || || fastjx_mode || 1 ||
 
|-
  
|-
  +
|| fastjx_numwl || 18 || || fastjx_prescutoff || 20.0 ||
−
|| fastjx_mode || 1 ||
 
 
|-
  
|-
  +
|| file_strat_aer || 'CMIP_1850_2014_average_sad_v3_56_level.asc' || || i_ageair_reset_method || 1 ||
−
|| fastjx_numwl || 18 ||
 
 
|-
  
|-
−
|| fastjx_prescutoff || 20.0 ||
+
|| i_mode_nzts || 15 || || i_mode_setup || 2 ||
 
|-
  
|-
  +
|| i_ukca_chem || 51 || || i_ukca_conserve_method || 2 ||
−
|| file_strat_aer || 'CMIP_1850_2014_average_sad_v3_56_level.asc' ||
 
 
|-
  
|-
  +
|| i_ukca_dms_flux || 1 || || i_ukca_hiorder_scheme || 0 ||
−
|| i_ageair_reset_method || 1 ||
 
 
|-
  
|-
  +
|| i_ukca_photol || 3 || || i_ukca_quasinewton_end || 3 ||
−
|| i_mode_nzts || 15 ||
 
 
|-
  
|-
  +
|| i_ukca_quasinewton_start || 2 || || i_ukca_scenario || 2 ||
−
|| i_mode_setup || 2 ||
 
 
|-
  
|-
  +
|| i_ukca_solcyc || 0 || || jvscat_file || 'FJX_scat.dat' ||
−
|| i_ukca_chem || 51 ||
 
 
|-
  
|-
  +
|| jvspec_dir || '$UMDIR/vn$VN/ctldata/UKCA/fastj' || || jvspec_file || 'FJX_spec_Nov11.dat' ||
−
|| i_ukca_conserve_method || 2 ||
 
 
|-
  
|-
  +
|| l_bcoc_bf || .true. || || l_bcoc_bm || .true. ||
−
|| i_ukca_dms_flux || 1 ||
 
 
|-
  
|-
  +
|| l_bcoc_ff || .true. || || l_mode_bhn_on || .true. ||
−
|| i_ukca_hiorder_scheme || 0 ||
 
 
|-
  
|-
−
|| i_ukca_photol || 3 ||
+
|| l_mode_bln_on || .false. || || l_ukca || .true. ||
 
|-
  
|-
  +
|| l_ukca_ageair || .true. || || l_ukca_aie1 || .true. ||
−
|| i_ukca_quasinewton_end || 3 ||
 
 
|-
  
|-
  +
|| l_ukca_aie2 || .true. || || l_ukca_arg_act || .true. ||
−
|| i_ukca_quasinewton_start || 2 ||
 
 
|-
  
|-
  +
|| l_ukca_asad_columns || .false. || || l_ukca_asad_plev || .true. ||
−
|| i_ukca_scenario || 2 ||
 
 
|-
  
|-
  +
|| l_ukca_chem_aero || .true. || || l_ukca_chem_plev || .true. ||
−
|| i_ukca_solcyc || 0 ||
 
 
|-
  
|-
  +
|| l_ukca_ddep_lev1 || .false. || || l_ukca_h2o_feedback || .true. ||
−
|| jvscat_file || 'FJX_scat.dat' ||
 
 
|-
  
|-
  +
|| l_ukca_het_psc || .true. || || l_ukca_ibvoc || .false. ||
−
|| jvspec_dir || '$UMDIR/vn$VN/ctldata/UKCA/fastj' ||
 
 
|-
  
|-
  +
|| l_ukca_intdd || .true. || || l_ukca_limit_nat || .true. ||
−
|| jvspec_file || 'FJX_spec_Nov11.dat' ||
 
 
|-
  
|-
−
|| l_bcoc_bf || .true. ||
+
|| l_ukca_linox_scaling || .true. || || l_ukca_mode || .true. ||
 
|-
  
|-
−
|| l_bcoc_bm || .true. ||
+
|| l_ukca_prescribech4 || .false. || || l_ukca_prim_moc || .true. ||
 
|-
  
|-
−
|| l_bcoc_ff || .true. ||
+
|| l_ukca_primbcoc || .true. || || l_ukca_primss || .true. ||
 
|-
  
|-
−
|| l_mode_bhn_on || .true. ||
+
|| l_ukca_primsu || .true. || || l_ukca_qch4inter || .false. ||
 
|-
  
|-
  +
|| l_ukca_quasinewton || .true. || || l_ukca_radaer || .true. ||
−
|| l_mode_bln_on || .false. ||
 
 
|-
  
|-
−
|| l_ukca || .true. ||
+
|| l_ukca_radaer_sustrat || .true. || || l_ukca_radch4 || .true. ||
 
|-
  
|-
−
|| l_ukca_ageair || .true. ||
+
|| l_ukca_radf11 || .false. || || l_ukca_radf113 || .false. ||
 
|-
  
|-
−
|| l_ukca_aie1 || .true. ||
+
|| l_ukca_radf12 || .false. || || l_ukca_radf22 || .false. ||
 
|-
  
|-
−
|| l_ukca_aie2 || .true. ||
+
|| l_ukca_radn2o || .true. || || l_ukca_rado3 || .true. ||
 
|-
  
|-
−
|| l_ukca_arg_act || .true. ||
+
|| l_ukca_sa_clim || .true. || || l_ukca_scale_biom_aer_ems || .true. ||
 
|-
  
|-
−
|| l_ukca_asad_columns || .false. ||
+
|| l_ukca_scale_seadms_ems || .false. || || l_ukca_scale_soa_yield || .true. ||
 
|-
  
|-
−
|| l_ukca_asad_plev || .true. ||
+
|| l_ukca_set_trace_gases || .true. || || l_ukca_sfix || .false. ||
 
|-
  
|-
−
|| l_ukca_chem_aero || .true. ||
+
|| l_ukca_so2ems_expvolc || .false. || || l_ukca_src_in_conservation || .true. ||
 
|-
  
|-
−
|| l_ukca_chem_plev || .true. ||
+
|| l_ukca_trophet || .false. || || l_ukca_use_background_aerosol || .true. ||
 
|-
  
|-
  +
|| lightnox_scale_fac || 2.0 || || max_ageair_reset_level || 10 ||
−
|| l_ukca_ddep_lev1 || .false. ||
 
 
|-
  
|-
  +
|| mode_activation_dryr || 37.5 || || mode_aitsol_cvscav || 0.5 ||
−
|| l_ukca_h2o_feedback || .true. ||
 
 
|-
  
|-
−
|| l_ukca_het_psc || .true. ||
+
|| mode_incld_so2_rfrac || 0.25 || || mode_parfrac || 2.5 ||
 
|-
  
|-
−
|| l_ukca_ibvoc || .false. ||
+
|| soa_yield_scaling || 2.0 || || || ||
 
|-
  
|-
  +
|| ukca_em_dir || Top-level paths:<br/> CMIP6_AEROCHEM_EMS = /data/d05/hadzm/ancil/n96e/cmip6/<br/>!AeroChemEms/clim_2000/v1 (Meto-Cray) <br/> = /projects/ukca-meto/hadzm/ancil/n96e/cmip6/<br/>!AeroChemEms/clim_2000/v1 (Monsoon2) <br/> '/work/n02/n02/ukca/ancil/n96e/cmip6/AeroChemEms/clim_2000/v1' (ARCHER) <br/> CMIP6_BIOG_EMS = /projects/um1/ancil/atmos/<br/>n96e/ukca_emiss/biogenic/v1 (Meto,Monsoon) <br/> '/work/y07/y07/umshared/ancil/atmos/n96e/ukca_emiss/biogenic/v1' (ARCHER) <br/> Locations are set in file ''<suite>/site/<site>.rc'' || || || ||
−
|| l_ukca_intdd || .true. ||
 
 
|-
  
|-
  +
|| ukca_em_files || '$CMIP6_AEROCHEM_EMS/BC_biofuel_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/BC_fossil_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/DMS_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/DMS_land_spiro1992.nc'<br/> '$CMIP6_AEROCHEM_EMS/OC_biofuel_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/OC_fossil_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/SO2_high_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/SO2_low_anthropogenic_1995_2004_clim.nc'<br/> '$UM_NETCDF_UKCAEMISS_SO2NAT_DIR/$UM_NETCDF_UKCAEMISS_SO2NAT_FILE'<br/> '$CMIP6_AEROCHEM_EMS/BC_biomass_high_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/BC_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/OC_biomass_high_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/OC_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_C2H6_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/POET_oceanic_C2H6_1990_lumped.nc'<br/> '$CMIP6_AEROCHEM_EMS/C2H6_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/C2H6_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_C3H8_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/POET_oceanic_C3H8_1990_lumped.nc'<br/> '$CMIP6_AEROCHEM_EMS/C3H8_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/C3H8_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/CH4_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_CO_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/POET_oceanic_CO_1990_processed.nc'<br/> '$CMIP6_AEROCHEM_EMS/CO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/CO_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/nox_soil_0.5_0.5_scaled12TgNO.nc'<br/> '$CMIP6_AEROCHEM_EMS/NO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/NO_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_NVOC_clim_2001-2010.nc'<br/> '$CMIP6_AEROCHEM_EMS/NVOC_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/NVOC_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_HCHO_clim_2001-2010.nc'<br/> '$CMIP6_AEROCHEM_EMS/HCHO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/HCHO_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_MeCHO_clim_2001-2010.nc'<br/> '$CMIP6_AEROCHEM_EMS/MeCHO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/MeCHO_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_Me2CO_clim_2001-2010.nc'<br/> '$CMIP6_AEROCHEM_EMS/Me2CO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/Me2CO_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_C5H8_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_Monoterp_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/NH3_ocean_bouwman1997.nc'<br/> '$CMIP6_AEROCHEM_EMS/NH3_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/NH3_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/NO_aircrft_anthropogenic_1995_2004_clim.nc' || || || ||
−
|| l_ukca_limit_nat || .true. ||
 
 
|-
  
|-
  +
|| ukca_h2mmr || 3.4528E-08 || || ukca_n2mmr || 7.5468E-01 ||
−
|| l_ukca_linox_scaling || .true. ||
 
 
|-
  
|-
  +
|| ukca_offline_dir || ''ignored'' || || ukca_offline_files || ''ignored'' ||
−
|| l_ukca_mode || .true. ||
 
 
|-
  
|-
  +
|| ukca_rcpdir || '/home/d05/hadzm/job_files/scenario_files' (MetO/Monsoon2) <br/> '/work/n02/n02/ukca/job_files/scenario_files' (ARCHER) || || ukca_rcpfile || 'trgas_rcp_clim_2000.dat' ||
−
|| l_ukca_prescribech4 || .false. ||
 
 
|-
  
|-
  +
|| ukcaaclw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_ac_lw' || || ukcaacsw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_ac_sw' ||
−
|| l_ukca_prim_moc || .true. ||
 
 
|-
  
|-
  +
|| ukcaanlw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_an_lw' || || ukcaansw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_an_sw' ||
−
|| l_ukca_primbcoc || .true. ||
 
 
|-
  
|-
  +
|| ukcacrlw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_cr_lw' || || ukcacrsw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_cr_sw' ||
−
|| l_ukca_primss || .true. ||
 
 
|-
  
|-
  +
|| ukcaprec || '$SPECTRAL_FILE_DIR/RADAER_pcalc.ukca' || || || ||
−
|| l_ukca_primsu || .true. ||
 
  +
|}
  +
  +
== STASH requests ==
  +
Diagnostics Requested in ''u-ay770'' can be seen [[STASH_ay770 | here]]
  +
  +
== Assessment ==
  +
  +
UKCA evaluation suite output for : {{pdf|ukca_chem_eval_ay770.pdf|Chemistry}} and {{pdf|aero_eval_ay770.pdf|Aerosols}}
  +
  +
  +
Autoassess output (vs UM11.0 GA7): [http://www-hc/~hadvg/auto_assess/u-ay770_v_u-av674_1989_020/index.html Internal], [http://collab.metoffice.gov.uk/twiki/bin/viewfile/Static/MohitDalvi/AutoAssess/u-ay770_v_u-av674_1989_020/index.html External]. ''Note: Radiation area output not produced. Click on link for Aerosol area output''.
  +
  +
Validation notes: [http://www-hc/~hadvg/valid/u-ay770_v_u-av674_1989_020/browser.html Internal], [https://collab.metoffice.gov.uk/twiki/bin/viewfile/Static/MohitDalvi/valid/u-ay770_v_u-av674_1989_020/browser.html External]
  +
  +
= Scaling Tests =
  +
  +
Scaling tests of GA7.1+StratTrop free-running configuration have been performed on the XCS and ARCHER using UM vn10.6.1. Scaling plots are below.
  +
  +
<gallery widths=300px heights=300px>
  +
Image:XCS36_timings_GA71UKCA_cores.png|XCS GA7.1+StratTrop vn10.6.1 (36PPN)
  +
Image:ARCHER_timings_GA71UKCA_cores.png|ARCHER GA7.1+StratTrop vn10.6.1 (24PPN)
  +
</gallery>
  +
  +
= Monsoon2 changes including MOOSE archiving =
  +
  +
You will likely need to correctly set your Monsoon2 project and MOOSE project name in the suite. To do this go to '''suite conf <math>\rightarrow</math> Host Machine <math>\rightarrow</math> Met Office / Monsoon'''. You should then:
  +
  +
* Set ''Account_Monsoon'' to the correct value, e.g. '''ukca-cam''' etc.
  +
* Put the correct ''MOOSE project name'' if required, e.g. '''ukca'''. Your Monsoon2 MOOSE project will be of the form ''project-NAME'', and you only need to enter ''NAME'' here.
  +
* If you do not yet have access to MOOSE, please contact '''monsoon "at" metoffice.gov.uk'''.
  +
  +
= NEXCS changes including JASMIN archiving =
  +
  +
== Setting your NEXCS project ==
  +
  +
You might need to correctly set your NEXCS project in the suite and at the top of the '''<code>rose-suite.conf</code>''' as currently this is set to '''nexcs-n02''' in both places.
  +
  +
For the suite go to '''suite conf <math>\rightarrow</math> Host Machine <math>\rightarrow</math> Met Office / Monsoon'''. You should then:
  +
  +
* Set ''Account_Monsoon'' to the correct value, e.g. '''nexcs-n01''' etc.
  +
  +
The changes to <code>rose-suite.conf</code> must be made at the top of the file, where the lines
  +
root-dir{share}=*=/projects/nexcs-n02/$USER
  +
root-dir{work}=*=/projects/nexcs-n02/$USER
  +
are, and change the <code>nexcs-n02</code> to be the appropriate project.
  +
  +
== JASMIN archiving using pptransfer ==
  +
  +
The suite is currently configured to use the ''pptransfer'' task to archive the data to JASMIN. The ''Archer Archiving'' panel is used to copy the data to <code>$SCRATCH</code> as the model runs. Note that this data may be deleted so it is essential that it is copied elsewhere as described below.
  +
  +
To be able to copy the files to JASMIN you should do the following:
  +
  +
* Set the value of ''transfer_dir'' to be the path to a JASMIN Group Workspace, e.g. <code>/group_workspaces/jasmin2/ukca/vol1/Juserid/archive</code>, where '''<code>Juserid</code>''' is your JASMIN userid. You can apply for access to a GWS on the [http://www.jasmin.ac.uk/services/group-workspaces/ JASMIN website].
  +
* Set the value of ''remote_host'' to be the transfer machine on JASMIN to use, e.g. <code>jasmin-xfer1.ceda.ac.uk</code> or <code>jasmin-xfer2.ceda.ac.uk</code>. Using <code>jasmin-xfer2</code> is recommended but you must first [http://www.jasmin.ac.uk/services/high-performance-data-transfer/ request access to '''hpxfer'''].
  +
* You should contact '''cms-support "at" ncas.ac.uk''' for advice as to how to connect to JASMIN from the XCS.
  +
  +
= ARCHER archiving to the RDF and JASMIN =
  +
  +
The ARCHER suite has been configured to allow for automatic archiving to the RDF (<code>/nerc</code> disk) and a JASMIN Group Workspace if required. These settings are found in the '''postproc <math>\rightarrow</math> Post Processing <math>\rightarrow</math> ''' and then either select '''Archer Archiving''' or '''JASMIN Transfer'''.
  +
  +
[[Image:U-ba915_running.png|thumb|300px|right|u-ba915 running, showing the ''postproc'' and ''pptransfer'' tasks in use.]]
  +
  +
== Archer Archiving using the postproc task ==
  +
  +
* Set the value of ''archive_root_path'' to be on the <code>/nerc</code> disk, e.g. <code>/nerc/n02/n02/Auserid/archive</code>, where '''<code>Auserid</code>''' is your ARCHER userid.
  +
* Turn on archiving via the ''postproc'' task, by clicking the '''suite conf <math>\rightarrow</math> Tasks <math>\rightarrow</math> Post Processing''' button.
  +
  +
== JASMIN Transfer using the pptransfer task ==
  +
  +
* Ensure that you have archiving to the RDF turned on using the ''postproc'' task (see above).
  +
* Set the value of ''transfer_dir'' to be the path to a JASMIN Group Workspace, e.g. <code>/gws/nopw/j04/ukca_vol1/Juserid/archive</code>, where '''<code>Juserid</code>''' is your JASMIN userid. You can apply for access to a GWS on the [http://www.jasmin.ac.uk/services/group-workspaces/ JASMIN website].
  +
* Set the value of ''remote_host'' to be the transfer machine on JASMIN to use, e.g. <code>jasmin-xfer1.ceda.ac.uk</code> or <code>jasmin-xfer2.ceda.ac.uk</code>. Using <code>jasmin-xfer2</code> is recommended but you must first [http://www.jasmin.ac.uk/services/high-performance-data-transfer/ request access to '''hpxfer'''].
  +
* You will need to ensure that you can [http://cms.ncas.ac.uk/wiki/Docs/PostProcessingAppArcherSetup#Setupssh-keytoconnectfromPUMAtoDataTransferNode connect from PUMA to the RDF data transfer node] (e.g. <code>dtn02.rdf.ac.uk</code>).
  +
* You will need to ensure that you can [http://cms.ncas.ac.uk/wiki/Docs/PostProcessingAppArcherSetup#Setupssh-keytoconnectfromDataTransferNodetoJASMIN connect from the data transfer node to JASMIN].
  +
* You will need to ensure you include the following in your RDF <code>~/.ssh/config</code> file:
  +
Host jasmin-xfer2 jasmin-xfer2.ceda.ac.uk
  +
Hostname jasmin-xfer2.ceda.ac.uk
  +
User Juserid
  +
IdentityFile ~/.ssh/id_rsa_jasmin
  +
ForwardAgent no
  +
  +
Host jasmin-xfer1 jasmin-xfer1.ceda.ac.uk
  +
Hostname jasmin-xfer1.ceda.ac.uk
  +
User Juserid
  +
IdentityFile ~/.ssh/id_rsa_jasmin
  +
ForwardAgent no
  +
: where '''<code>Juserid</code>''' is your JASMIN userid. You should replace <code>~/.ssh/id_rsa_jasmin</code> with the path to your JASMIN SSH key (if it is named differently).
  +
* You will need to ensure that you have the following in your PUMA <code>~/.ssh/config</code> file:
  +
Host dtn02 dtn02.rdf.ac.uk
  +
Hostname dtn02.rdf.ac.uk
  +
User Auserid
  +
IdentityFile ~/.ssh/id_dsa
  +
ForwardAgent no
  +
: where '''<code>Auserid</code>''' is your ARCHER/RDF userid. You should replace <code>~/.ssh/id_dsa</code> with the path to your ARCHER SSH key (if it is named differently).
  +
* Turn on the ''pptransfer'' task by clicking the '''suite conf <math>\rightarrow</math> Tasks <math>\rightarrow</math> PP Transfer''' button.
  +
  +
= UKCA Release Job - UM11.0 - Nudged =
  +
  +
'''UM11.0 Gregorian GA7.1 + UKCA Strattrop GLOMAP (N96L85) TS2000- Nudged using ERA data'''
  +
  +
----
  +
== Suite-id ==
  +
  +
* Met Office (XCE/F/S): '''[https://code.metoffice.gov.uk/trac/roses-u/intertrac/source:/b/a/7/4/9 u-ba749]'''
  +
* Monsoon2: '''[https://code.metoffice.gov.uk/trac/roses-u/intertrac/source:/b/b/2/0/2 u-bb202]'''
  +
* NEXCS: '''[https://code.metoffice.gov.uk/trac/roses-u/intertrac/source:/b/b/N/N/N u-bbNNN]'''
  +
* ARCHER: '''[https://code.metoffice.gov.uk/trac/roses-u/intertrac/source:/b/b/2/1/0 u-bb210]'''
  +
  +
'''Remember to always COPY these suites to a new one that you own, rather than checking them out.''' This will prevent you accidentally over-writing the settings in the original suite.
  +
  +
== Changes to convert a Free-running job to Nudged ==
  +
  +
1. Copy (''rosie copy'') a Free-running job
  +
  +
2. cd ~/roses/<new suite> and ''rose edit'' --> suite-conf --> Model configuration --> Select ''Gregorian''
  +
  +
3. Panel --> um --> namelist --> UM science settings --> Sec 39- Nudging --> set:
  +
{| border="1" cellpadding="2"
 
|-
  
|-
−
|| l_ukca_qch4inter || .false. ||
+
|| l_nudging || true
 
|-
  
|-
−
|| l_ukca_quasinewton || .true. ||
+
|| ndg_analysis_source || 0
 
|-
  
|-
  +
|| ndg_datapath || (path to ERA Nudging files) <br/> MetO: ''/data/d05/hadzm/analyses/era-int'' <br/> Monsoon:''/projects/ukca-admin/analyses/era-in'''<br/> ARCHER:''/work/n02/n02/ukca/analyses/era-in''
−
|| l_ukca_radaer || .true. ||
 
 
|-
  
|-
  +
|| ndg_hours_perdata || 6
−
|| l_ukca_radaer_sustrat || .true. ||
 
 
|-
  
|-
−
|| l_ukca_radch4 || .true. ||
+
|| ndg_lev_bottom || 12
 
|-
  
|-
−
|| l_ukca_radf11 || .false. ||
+
|| ndg_lev_top || 80
 
|-
  
|-
−
|| l_ukca_radf113 || .false. ||
+
|| ndg_on_lev_bottom || 4
 
|-
  
|-
−
|| l_ukca_radf12 || .false. ||
+
|| ndg_on_lev_top || 2
 
|-
  
|-
−
|| l_ukca_radf22 || .false. ||
+
|| ndg_relax_tvalue || 4.6296e-05
 
|-
  
|-
−
|| l_ukca_radn2o || .true. ||
+
|| ndg_relax_uvalue ||4.6296e-05
 
|-
  
|-
−
|| l_ukca_rado3 || .true. ||
+
|| ndg_relax_vvalue || 4.6296e-05
 
|-
  
|-
−
|| l_ukca_sa_clim || .true. ||
+
|| ndg_strat_fac || 1.0
−
|-
 +
|}
  +
4. Panel > um --> namelist --> Model Input and Output --> STASH requests --> STASH requests <br/> Add a Stash request for '''30-451''' (Pressure at Tropopause level)with ''DIAG, TALLTS, UPUKCA'' profile.<br/>
−
|| l_ukca_scale_biom_aer_ems || .true. ||
 
  +
You can also add Nudging diagnostics - (Section 39 :39001,003,006,008,011,013) to help identify any problems in this setup.
−
|-
  
  +
−
|| l_ukca_scale_seadms_ems || .false. ||
 
  +
5. Edit file ''app/um/opt/rose-app-gregorian.conf'' and replace:
−
|-
  
  +
- The ''ancilfilename'' for Sea surface temperature (usu SST_ANCIL_FILE) with location of the Gregorian Tslice2000 SST file e.g. ''$SST_SICE_ANCIL/sst_mon_clim_2000_n96e_grg.anc''
−
|| l_ukca_scale_soa_yield || .true. ||
 
  +
- The ''ancilfilename'' for Sea Ice (usu SICE_ANCIL_FILE) with location of the Gregorian Tslice2000 Sice file e.g. ''$SST_SICE_ANCIL/sice_mon_clim_2000_n96e_grg.anc''
−
|-
  
  +
$SST_SICE_ANCIL should already be set in your suite.
−
|| l_ukca_set_trace_gases || .true. ||
 
  +
−
|-
  
  +
6. In same file: Manually activate the ''meanfreqim='' item i.e. remove the ''!!'' prefixing the item.
−
|| l_ukca_sfix || .false. ||
 
  +
−
|-
  
  +
7. Edit ''app/um/rose-app.conf'' and replace '''two''' files from the ''ukca_em_files'' list:
−
|| l_ukca_so2ems_expvolc || .false. ||
 
  +
- ''$UM_NETCDF_UKCAEMISS_SO2_NAT_DIR/UM_NETCDF_UKCAEMISS_SO2_NAT_FILE'' with ''$CMIP6_AEROCHEM_EMS/aerocom/ukca_emiss_SO2_nat_grg.nc''
−
|-
  
  +
- ''$CMIP6_AEROCHEM_EMS/CH4_biomass_low_1995_2004.nc'' with ''$CMIP6_AEROCHEM_EMS/CH4_biomass_low_1995_2004_grg.nc'' (Not used in std config as CH4 is specified).
−
|| l_ukca_src_in_conservation || .true. ||
 
  +
−
|-
  
  +
== Resources ==
−
|| l_ukca_trophet || .false. ||
 
  +
{| border="1" style="background-color:white" cellpadding="10"
−
|-
  
−
|| l_ukca_use_background_aerosol || .true. ||
 
−
|-
  
−
|| lightnox_scale_fac || 2.0 ||
 
−
|-
  
−
|| max_ageair_reset_level || 10 ||
 
−
|-
  
−
|| mode_activation_dryr || 37.5 ||
 
−
|-
  
−
|| mode_aitsol_cvscav || 0.5 ||
 
−
|-
  
−
|| mode_incld_so2_rfrac || 0.25 ||
 
 
|-
  
|-
  +
|| Nudged || XCE/F/S: '''<code>u-ba749</code>''' || Monsoon2: '''<code>u-bb202</code>''' || NEXCS: '''<code>u-bbNNN</code>''' || ARCHER: '''<code>u-bb210</code>'''
−
|| mode_parfrac || 2.5 ||
 
 
|-
  
|-
  +
|| Run-time (per model month) || ~1 hour 30 minutes (XCS) || ~1 hour 30 minutes || ~1 hour 30 minutes || ~1 hour 30 minutes
−
|| soa_yield_scaling || 2.0 ||
 
 
|-
  
|-
  +
|| Cycling || P1M in PT1H40M (XCS) || P1M in PT1H40M || P1M in PT1H40M <br/> This could be changed to take advantage of the longer queues on NEXCS. || P1M in PT1H40M <br/> This could be changed to take advantage of the longer queues on ARCHER.
−
|| ukca_em_dir || ||
  
 
|-
  
|-
  +
|| Estimated cost || || 216 node-hours/model year || 216 node-hours/model year <br/> or 117 kAU/model year equivalent || 117 kAU/model year
−
|| ukca_em_files || '$CMIP6_AEROCHEM_EMS/BC_biofuel_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/BC_fossil_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/DMS_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/DMS_land_spiro1992.nc'<br/> '$CMIP6_AEROCHEM_EMS/OC_biofuel_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/OC_fossil_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/SO2_high_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/SO2_low_anthropogenic_1995_2004_clim.nc'<br/> '$UM_NETCDF_UKCAEMISS_SO2NAT_DIR/$UM_NETCDF_UKCAEMISS_SO2NAT_FILE'<br/> '$CMIP6_AEROCHEM_EMS/BC_biomass_high_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/BC_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/OC_biomass_high_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/OC_biomass_low_1995_2004_clim.nc'<br/>
  
−
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_C2H6_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/POET_oceanic_C2H6_1990_lumped.nc'<br/> '$CMIP6_AEROCHEM_EMS/C2H6_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/C2H6_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_C3H8_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/POET_oceanic_C3H8_1990_lumped.nc'<br/> '$CMIP6_AEROCHEM_EMS/C3H8_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/C3H8_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/CH4_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_CO_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/POET_oceanic_CO_1990_processed.nc'<br/> '$CMIP6_AEROCHEM_EMS/CO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/CO_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/nox_soil_0.5_0.5_scaled12TgNO.nc'<br/> '$CMIP6_AEROCHEM_EMS/NO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/NO_biomass_low_1995_2004_clim.nc'<br/>'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_NVOC_clim_2001-2010.nc'<br/> '$CMIP6_AEROCHEM_EMS/NVOC_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/NVOC_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_HCHO_clim_2001-2010.nc'<br/> '$CMIP6_AEROCHEM_EMS/HCHO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/HCHO_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_MeCHO_clim_2001-2010.nc'<br/> '$CMIP6_AEROCHEM_EMS/MeCHO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/MeCHO_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_Me2CO_clim_2001-2010.nc'<br/> '$CMIP6_AEROCHEM_EMS/Me2CO_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/Me2CO_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_C5H8_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_Monoterp_clim_2001-2010.nc'<br/> '$CMIP6_BIOG_EMS/NH3_ocean_bouwman1997.nc'<br/> '$CMIP6_AEROCHEM_EMS/NH3_anthropogenic_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/NH3_biomass_low_1995_2004_clim.nc'<br/> '$CMIP6_AEROCHEM_EMS/NO_aircrft_anthropogenic_1995_2004_clim.nc' || Top-level paths:<br/> CMIP6_AEROCHEM_EMS = /data/d05/hadzm/ancil/n96e/cmip6/<br/>!AeroChemEms/clim_2000/v1 (Meto-Cray) <br/> = /projects/ukca-meto/hadzm/ancil/n96e/cmip6/<br/>!AeroChemEms/clim_2000/v1 (Monsoon2) <br/> CMIP6_BIOG_EMS = /projects/um1/ancil/atmos/<br/>n96e/ukca_emiss/biogenic/v1 (Both systems). <br/> Locations are set in file ''<suite>/site/<site>.rc'' ||
  
 
|-
  
|-
  +
|| Decomposition || 18EW x 24NS on 12 nodes (XCS: 36PPN) || 18EW x 24NS on 12 nodes (36PPN) || 18EW x 24NS on 12 nodes (36PPN) || 24EW x 15NS on 15 nodes (24PPN)
−
|| ukca_h2mmr || 3.4528E-08 ||
 
 
|-
  
|-
  +
|| Storage Requirements<br>(current STASH settings) || 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps) || 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps)<br>MASS costs: £2.01 per model year || 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps) <br/>copied to a JASMIN GWS as the model runs || 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps) <br/>copied to the <code>/nerc</code> disk and a JASMIN GWS as the model runs
−
|| ukca_n2mmr || 7.5468E-01 ||
 
 
|-
  
|-
−
|| ukca_offline_dir || ''ignored'' ||
 
−
|-
  
−
|| ukca_offline_files || ''ignored'' ||
 
−
|-
  
−
|| ukca_rcpdir || '/home/d05/hadzm/job_files/scenario_files' ||
 
−
|-
  
−
|| ukca_rcpfile || 'trgas_rcp_clim_2000.dat' ||
 
−
|-
  
−
|| ukcaaclw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_ac_lw' ||
 
−
|-
  
−
|| ukcaacsw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_ac_sw' ||
 
−
|-
  
−
|| ukcaanlw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_an_lw' ||
 
−
|-
  
−
|| ukcaansw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_an_sw' ||
 
−
|-
  
−
|| ukcacrlw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_cr_lw' ||
 
−
|-
  
−
|| ukcacrsw || '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_cr_sw' ||
 
−
|-
  
−
|| ukcaprec || '$SPECTRAL_FILE_DIR/RADAER_pcalc.ukca' ||
  
 
|}
  
|}
−  
−
== STASH requests ==
  
−
Diagnostics Requested in ''u-ay770'' can be seen [[STASH_ay770 | here]]
  
−  
−
== Assessment ==
  
−  
−
UKCA evaluation suite output for : {{pdf|ukca_chem_eval_ay770.pdf|Chemistry}} and {{pdf|aero_eval_ay770.pdf|Aerosols}}
  
−  
−
Autoassess output (vs UM11.0 GA7): [http://www-hc/~hadvg/auto_assess/u-ay770_v_u-av674_1989_020/index.html Internal], [http://collab.metoffice.gov.uk/twiki/bin/viewfile/Static/MohitDalvi/AutoAssess/u-ay770_v_u-av674_1989_020/index.html External]. ''Note: Radiation area output not produced. Click on link for Aerosol area output''.
  
−  
−
Validation notes: [http://www-hc/~hadvg/valid/u-ay770_v_u-av674_1989_020/browser.html Internal], [https://collab.metoffice.gov.uk/twiki/bin/viewfile/Static/MohitDalvi/valid/u-ay770_v_u-av674_1989_020/browser.html External]
  

Latest revision as of 13:17, 30 January 2019

Overview

Free-running XCE/F/S: u-ay770 Monsoon2: u-bb055 NEXCS: u-bb056 ARCHER: u-ba915
Run-time (per model month) ~1 hour 10 minutes (XCS) ~1 hour 10 minutes ~1 hour 10 minutes ~1 hour 20 minutes
Cycling P1M in PT1H40M (XCS) P1M in PT1H40M P1M in PT1H40M
This could be changed to take advantage of the longer queues on NEXCS.		 P1M in PT1H40M
This could be changed to take advantage of the longer queues on ARCHER.
Estimated cost 168 node-hours/model year 168 node-hours/model year
or 91 kAU/model year equivalent		 91 kAU/model year
Decomposition 18EW x 24NS on 12 nodes (XCS: 36PPN) 18EW x 24NS on 12 nodes (36PPN) 18EW x 24NS on 12 nodes (36PPN) 24EW x 15NS on 15 nodes (24PPN)
Storage Requirements
(current STASH settings)		 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps) 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps)
MASS costs: £2.01 per model year		 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps)
copied to a JASMIN GWS as the model runs		 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps)
copied to the /nerc disk and a JASMIN GWS as the model runs


UKCA Release Job - UM11.0 - Free Running

UM11.0 GA7.1 + UKCA Strattrop GLOMAP (N96L85) TS2000

Suite -id

Remember to always COPY these suites to a new one that you own, rather than checking them out. This will prevent you accidentally over-writing the settings in the original suite.

Base/ inherited configuration

UM11.0 GA7.1 UKCA Strattrop GLOMAP Y2014; TropO3 fixes suite u-av818 combined with settings from u-au917

UKCA evaluation suite output for u-au917 can be seen here

Branches

Branch name Description Metadata change?
branches/dev/lukeabraham/vn11.0_ukca_linox_tweaks Uses single NOx production factor for cld-cld and cldgrn flashes Yes
branches/dev/dev/mohitdalvi/vn11.0_ukca_ageair_and_stashm Fixes STASH definition of age-of-air pressure-level diagnostic
Not required for build (fcm_make_um), only replaces runtime STASHmaster
(specified in app/um/rose-app.conf=>[file:STASHmaster] section)		 Yes
branches/dev/dev/mohitdalvi/vn11.0_ukca_fix_o3_ste Fixes a bug in derivation of tropopause in UKCA and the calculation of the Ozone STE diagnostic No
  • Suite uses metadata from ~hadzm/code/vn11.0_ukca_linox_tweaks_meta/rose-meta/um-atmos/HEAD (same location on meto-cray and Monsoon2), as specified in app/um/rose-app.conf, meta=

Initialisation

The suite (meteorological, aerochem variables) will initialise from a dump produced at the end of a 20-year spin-up run of the previous GA7.1+Strattrop AMIP run u-au917

  • XCS-R /data/d05/hadzm/dumps/au917a.da20080901_00
  • Monsoon2/NEXCS:/projects/ukca-admin/inputs/initial/N96eL85/au917a.da20080901_00
  • ARCHER: /work/n02/n02/ukca/initial/N96eL85/au917a.da20080901_00

The path to this is set in the file(s): site/meto_cray.rc, site/MONSOON.rc, or site/archer.rc as variable AINITIAL. You can look in the site files for other specific changes.

Forcing data

Emissions

Emissions for aerosol and chemical species (except biogenic) are prescribed as monthly cyclic climatologies around Year2000 by averaging data for 1995-2004 from the CMIP6 historical emissions developed for UKESM1. Script used was make_clim_emiss.py.

Biogenic emissions used are those originally developed for the NERC ACSIS project and represent datasets pertaining to 1990s,2000s for different species.

Sea surface temperature and sea ice concentrations

The SST and Sice values are also prescribed as monthly climatologies for 2000 created by averaging over 1995-2004 the timeseries data generated for CMIP6 Atmos-only simulations.

GHG and Trace Gas Concentrations

  • These have been specified as values averaged over 1995-2004 from the historical GHG forcing data prepared for CMIP6.
  • This was done by manually averaging data for above years from the files {{{/projects/ancils/cmip6/ancils/any/timeseries_1850-2014/cmip6/global_ghg_cmip6.conf}}} and {{{trgas_rcp_historical.dat}}} respectively for the Radiation GHG inputs and UKCA trace gas specification.

Critical Model setup / Namelist settings

SST/ Seaice

  • Panel: um => namelist => Reconfiguration and Ancil control => Configure ancil and dump fields
  • Look for initialisation of items:
stashcode=24 (SST), ancilfilename='$SST_SICE_ANCIL/sst_clim_mon_2000_n96e.anc'
stashcodes=31,32 (sea-ice), ancilfilename='$SST_SICE_ANCIL/sice_clim_mon_2000_n96e.anc'
where:
site/meto_cray.rc: SST_SICE_ANCIL = '/data/d05/hadzm/ancil/n96e/cmip6/sstice/clim_2000'
site/MONSOON.rc: SST_SICE_ANCIL = '/projects/ukca-meto/hadzm/ancil/n96e/cmip6/sstice/clim_2000'
site/archer.rc: SST_SICE_ANCIL = '/work/n02/n02/ukca/ancil/n96e/cmip6/sstice/clim_2000'

RUN_Radiation GHG values

  • Panel: Sec 01 02 Radiation => Gas MMRs => Varying Gas MMRs: Set l_climcfg=False and then specify these values in the Gas MMRs' panel:
!= Item = = Value = = Remarks =
c113mmr 0.0
c114mmr 0.0
c11mmr 0.0
c12mmr 4.3674e-09
ch4mmr 9.799e-04 ignored, uses conc from UKCA
co2_mmr 5.5815e-04
hcfc22mmr 0.0
hfc125mmr 0.0
hfc134ammr 3.5211e-10
n2ommr 4.7797e-04 ignored, uses conc from UKCA
o2mmr 0.2314

RUN_UKCA settings

Item Value Remarks Item Value Remarks
biom_aer_ems_scaling 2.0 chem_timestep 3600
dir_strat_aer '/home/d05/hadzm/job_files/SAD'
'/work/n02/n02/ukca/job_files/SAD' (ARCHER)		 fastjx_mode 1
fastjx_numwl 18 fastjx_prescutoff 20.0
file_strat_aer 'CMIP_1850_2014_average_sad_v3_56_level.asc' i_ageair_reset_method 1
i_mode_nzts 15 i_mode_setup 2
i_ukca_chem 51 i_ukca_conserve_method 2
i_ukca_dms_flux 1 i_ukca_hiorder_scheme 0
i_ukca_photol 3 i_ukca_quasinewton_end 3
i_ukca_quasinewton_start 2 i_ukca_scenario 2
i_ukca_solcyc 0 jvscat_file 'FJX_scat.dat'
jvspec_dir '$UMDIR/vn$VN/ctldata/UKCA/fastj' jvspec_file 'FJX_spec_Nov11.dat'
l_bcoc_bf .true. l_bcoc_bm .true.
l_bcoc_ff .true. l_mode_bhn_on .true.
l_mode_bln_on .false. l_ukca .true.
l_ukca_ageair .true. l_ukca_aie1 .true.
l_ukca_aie2 .true. l_ukca_arg_act .true.
l_ukca_asad_columns .false. l_ukca_asad_plev .true.
l_ukca_chem_aero .true. l_ukca_chem_plev .true.
l_ukca_ddep_lev1 .false. l_ukca_h2o_feedback .true.
l_ukca_het_psc .true. l_ukca_ibvoc .false.
l_ukca_intdd .true. l_ukca_limit_nat .true.
l_ukca_linox_scaling .true. l_ukca_mode .true.
l_ukca_prescribech4 .false. l_ukca_prim_moc .true.
l_ukca_primbcoc .true. l_ukca_primss .true.
l_ukca_primsu .true. l_ukca_qch4inter .false.
l_ukca_quasinewton .true. l_ukca_radaer .true.
l_ukca_radaer_sustrat .true. l_ukca_radch4 .true.
l_ukca_radf11 .false. l_ukca_radf113 .false.
l_ukca_radf12 .false. l_ukca_radf22 .false.
l_ukca_radn2o .true. l_ukca_rado3 .true.
l_ukca_sa_clim .true. l_ukca_scale_biom_aer_ems .true.
l_ukca_scale_seadms_ems .false. l_ukca_scale_soa_yield .true.
l_ukca_set_trace_gases .true. l_ukca_sfix .false.
l_ukca_so2ems_expvolc .false. l_ukca_src_in_conservation .true.
l_ukca_trophet .false. l_ukca_use_background_aerosol .true.
lightnox_scale_fac 2.0 max_ageair_reset_level 10
mode_activation_dryr 37.5 mode_aitsol_cvscav 0.5
mode_incld_so2_rfrac 0.25 mode_parfrac 2.5
soa_yield_scaling 2.0
ukca_em_dir Top-level paths:
CMIP6_AEROCHEM_EMS = /data/d05/hadzm/ancil/n96e/cmip6/
!AeroChemEms/clim_2000/v1 (Meto-Cray)
= /projects/ukca-meto/hadzm/ancil/n96e/cmip6/
!AeroChemEms/clim_2000/v1 (Monsoon2)
'/work/n02/n02/ukca/ancil/n96e/cmip6/AeroChemEms/clim_2000/v1' (ARCHER)
CMIP6_BIOG_EMS = /projects/um1/ancil/atmos/
n96e/ukca_emiss/biogenic/v1 (Meto,Monsoon)
'/work/y07/y07/umshared/ancil/atmos/n96e/ukca_emiss/biogenic/v1' (ARCHER)
Locations are set in file <suite>/site/<site>.rc
ukca_em_files '$CMIP6_AEROCHEM_EMS/BC_biofuel_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/BC_fossil_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/DMS_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/DMS_land_spiro1992.nc'
'$CMIP6_AEROCHEM_EMS/OC_biofuel_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/OC_fossil_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/SO2_high_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/SO2_low_anthropogenic_1995_2004_clim.nc'
'$UM_NETCDF_UKCAEMISS_SO2NAT_DIR/$UM_NETCDF_UKCAEMISS_SO2NAT_FILE'
'$CMIP6_AEROCHEM_EMS/BC_biomass_high_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/BC_biomass_low_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/OC_biomass_high_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/OC_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_C2H6_clim_2001-2010.nc'
'$CMIP6_BIOG_EMS/POET_oceanic_C2H6_1990_lumped.nc'
'$CMIP6_AEROCHEM_EMS/C2H6_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/C2H6_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_C3H8_clim_2001-2010.nc'
'$CMIP6_BIOG_EMS/POET_oceanic_C3H8_1990_lumped.nc'
'$CMIP6_AEROCHEM_EMS/C3H8_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/C3H8_biomass_low_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/CH4_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_CO_clim_2001-2010.nc'
'$CMIP6_BIOG_EMS/POET_oceanic_CO_1990_processed.nc'
'$CMIP6_AEROCHEM_EMS/CO_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/CO_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/nox_soil_0.5_0.5_scaled12TgNO.nc'
'$CMIP6_AEROCHEM_EMS/NO_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/NO_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_NVOC_clim_2001-2010.nc'
'$CMIP6_AEROCHEM_EMS/NVOC_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/NVOC_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_HCHO_clim_2001-2010.nc'
'$CMIP6_AEROCHEM_EMS/HCHO_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/HCHO_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_MeCHO_clim_2001-2010.nc'
'$CMIP6_AEROCHEM_EMS/MeCHO_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/MeCHO_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_Me2CO_clim_2001-2010.nc'
'$CMIP6_AEROCHEM_EMS/Me2CO_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/Me2CO_biomass_low_1995_2004_clim.nc'
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_C5H8_clim_2001-2010.nc'
'$CMIP6_BIOG_EMS/MEGAN-MACC_biogenic_Monoterp_clim_2001-2010.nc'
'$CMIP6_BIOG_EMS/NH3_ocean_bouwman1997.nc'
'$CMIP6_AEROCHEM_EMS/NH3_anthropogenic_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/NH3_biomass_low_1995_2004_clim.nc'
'$CMIP6_AEROCHEM_EMS/NO_aircrft_anthropogenic_1995_2004_clim.nc'
ukca_h2mmr 3.4528E-08 ukca_n2mmr 7.5468E-01
ukca_offline_dir ignored ukca_offline_files ignored
ukca_rcpdir '/home/d05/hadzm/job_files/scenario_files' (MetO/Monsoon2)
'/work/n02/n02/ukca/job_files/scenario_files' (ARCHER)		 ukca_rcpfile 'trgas_rcp_clim_2000.dat'
ukcaaclw '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_ac_lw' ukcaacsw '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_ac_sw'
ukcaanlw '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_an_lw' ukcaansw '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_an_sw'
ukcacrlw '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_cr_lw' ukcacrsw '$UMDIR/vn$VN/ctldata/UKCA/radaer/ga7_1/nml_cr_sw'
ukcaprec '$SPECTRAL_FILE_DIR/RADAER_pcalc.ukca'

STASH requests

Diagnostics Requested in u-ay770 can be seen here

Assessment

UKCA evaluation suite output for : Pdficon small.png Chemistry Info circle.png and Pdficon small.png Aerosols Info circle.png


Autoassess output (vs UM11.0 GA7): Internal, External. Note: Radiation area output not produced. Click on link for Aerosol area output.

Validation notes: Internal, External

Scaling Tests

Scaling tests of GA7.1+StratTrop free-running configuration have been performed on the XCS and ARCHER using UM vn10.6.1. Scaling plots are below.

  • XCS GA7.1+StratTrop vn10.6.1 (36PPN)

  • ARCHER GA7.1+StratTrop vn10.6.1 (24PPN)

Monsoon2 changes including MOOSE archiving

You will likely need to correctly set your Monsoon2 project and MOOSE project name in the suite. To do this go to suite conf Host Machine Met Office / Monsoon. You should then:

  • Set Account_Monsoon to the correct value, e.g. ukca-cam etc.
  • Put the correct MOOSE project name if required, e.g. ukca. Your Monsoon2 MOOSE project will be of the form project-NAME, and you only need to enter NAME here.
  • If you do not yet have access to MOOSE, please contact monsoon "at" metoffice.gov.uk.

NEXCS changes including JASMIN archiving

Setting your NEXCS project

You might need to correctly set your NEXCS project in the suite and at the top of the rose-suite.conf as currently this is set to nexcs-n02 in both places.

For the suite go to suite conf Host Machine Met Office / Monsoon. You should then:

  • Set Account_Monsoon to the correct value, e.g. nexcs-n01 etc.

The changes to rose-suite.conf must be made at the top of the file, where the lines 

root-dir{share}=*=/projects/nexcs-n02/$USER
root-dir{work}=*=/projects/nexcs-n02/$USER

are, and change the nexcs-n02 to be the appropriate project.

JASMIN archiving using pptransfer

The suite is currently configured to use the pptransfer task to archive the data to JASMIN. The Archer Archiving panel is used to copy the data to $SCRATCH as the model runs. Note that this data may be deleted so it is essential that it is copied elsewhere as described below.

To be able to copy the files to JASMIN you should do the following:

  • Set the value of transfer_dir to be the path to a JASMIN Group Workspace, e.g. /group_workspaces/jasmin2/ukca/vol1/Juserid/archive, where Juserid is your JASMIN userid. You can apply for access to a GWS on the JASMIN website.
  • Set the value of remote_host to be the transfer machine on JASMIN to use, e.g. jasmin-xfer1.ceda.ac.uk or jasmin-xfer2.ceda.ac.uk. Using jasmin-xfer2 is recommended but you must first request access to hpxfer.
  • You should contact cms-support "at" ncas.ac.uk for advice as to how to connect to JASMIN from the XCS.

ARCHER archiving to the RDF and JASMIN

The ARCHER suite has been configured to allow for automatic archiving to the RDF (/nerc disk) and a JASMIN Group Workspace if required. These settings are found in the postproc Post Processing and then either select Archer Archiving or JASMIN Transfer.

u-ba915 running, showing the postproc and pptransfer tasks in use.

Archer Archiving using the postproc task

  • Set the value of archive_root_path to be on the /nerc disk, e.g. /nerc/n02/n02/Auserid/archive, where Auserid is your ARCHER userid.
  • Turn on archiving via the postproc task, by clicking the suite conf Tasks Post Processing button.

JASMIN Transfer using the pptransfer task

  • Ensure that you have archiving to the RDF turned on using the postproc task (see above).
  • Set the value of transfer_dir to be the path to a JASMIN Group Workspace, e.g. /gws/nopw/j04/ukca_vol1/Juserid/archive, where Juserid is your JASMIN userid. You can apply for access to a GWS on the JASMIN website.
  • Set the value of remote_host to be the transfer machine on JASMIN to use, e.g. jasmin-xfer1.ceda.ac.uk or jasmin-xfer2.ceda.ac.uk. Using jasmin-xfer2 is recommended but you must first request access to hpxfer.
  • You will need to ensure that you can connect from PUMA to the RDF data transfer node (e.g. dtn02.rdf.ac.uk).
  • You will need to ensure that you can connect from the data transfer node to JASMIN.
  • You will need to ensure you include the following in your RDF ~/.ssh/config file:
Host jasmin-xfer2 jasmin-xfer2.ceda.ac.uk
	Hostname jasmin-xfer2.ceda.ac.uk
	User Juserid
	IdentityFile ~/.ssh/id_rsa_jasmin
	ForwardAgent no

Host jasmin-xfer1 jasmin-xfer1.ceda.ac.uk
        Hostname jasmin-xfer1.ceda.ac.uk
        User Juserid
        IdentityFile ~/.ssh/id_rsa_jasmin
        ForwardAgent no
where Juserid is your JASMIN userid. You should replace ~/.ssh/id_rsa_jasmin with the path to your JASMIN SSH key (if it is named differently).
  • You will need to ensure that you have the following in your PUMA ~/.ssh/config file:
Host dtn02 dtn02.rdf.ac.uk
        Hostname dtn02.rdf.ac.uk
        User Auserid
        IdentityFile ~/.ssh/id_dsa
        ForwardAgent no
where Auserid is your ARCHER/RDF userid. You should replace ~/.ssh/id_dsa with the path to your ARCHER SSH key (if it is named differently).
  • Turn on the pptransfer task by clicking the suite conf Tasks PP Transfer button.

UKCA Release Job - UM11.0 - Nudged

UM11.0 Gregorian GA7.1 + UKCA Strattrop GLOMAP (N96L85) TS2000- Nudged using ERA data

Suite-id

Remember to always COPY these suites to a new one that you own, rather than checking them out. This will prevent you accidentally over-writing the settings in the original suite.

Changes to convert a Free-running job to Nudged

1. Copy (rosie copy) a Free-running job

2. cd ~/roses/<new suite> and rose edit --> suite-conf --> Model configuration --> Select Gregorian

3. Panel --> um --> namelist --> UM science settings --> Sec 39- Nudging --> set:

l_nudging true
ndg_analysis_source 0
ndg_datapath (path to ERA Nudging files)
MetO: /data/d05/hadzm/analyses/era-int
Monsoon:/projects/ukca-admin/analyses/era-in'
ARCHER:/work/n02/n02/ukca/analyses/era-in
ndg_hours_perdata 6
ndg_lev_bottom 12
ndg_lev_top 80
ndg_on_lev_bottom 4
ndg_on_lev_top 2
ndg_relax_tvalue 4.6296e-05
ndg_relax_uvalue 4.6296e-05
ndg_relax_vvalue 4.6296e-05
ndg_strat_fac 1.0

4. Panel > um --> namelist --> Model Input and Output --> STASH requests --> STASH requests
Add a Stash request for 30-451 (Pressure at Tropopause level)with DIAG, TALLTS, UPUKCA profile.
You can also add Nudging diagnostics - (Section 39 :39001,003,006,008,011,013) to help identify any problems in this setup.

5. Edit file app/um/opt/rose-app-gregorian.conf and replace: 

  - The ancilfilename for Sea surface temperature (usu SST_ANCIL_FILE) with location of the Gregorian Tslice2000 SST file e.g. $SST_SICE_ANCIL/sst_mon_clim_2000_n96e_grg.anc
  - The ancilfilename for Sea Ice (usu SICE_ANCIL_FILE) with location of the Gregorian Tslice2000 Sice file e.g. $SST_SICE_ANCIL/sice_mon_clim_2000_n96e_grg.anc
  $SST_SICE_ANCIL should already be set in your suite.

6. In same file: Manually activate the meanfreqim= item i.e. remove the !! prefixing the item.

7. Edit app/um/rose-app.conf and replace two files from the ukca_em_files list: 

  - $UM_NETCDF_UKCAEMISS_SO2_NAT_DIR/UM_NETCDF_UKCAEMISS_SO2_NAT_FILE with $CMIP6_AEROCHEM_EMS/aerocom/ukca_emiss_SO2_nat_grg.nc
  - $CMIP6_AEROCHEM_EMS/CH4_biomass_low_1995_2004.nc with $CMIP6_AEROCHEM_EMS/CH4_biomass_low_1995_2004_grg.nc (Not used in std config as CH4 is specified).

Resources

Nudged XCE/F/S: u-ba749 Monsoon2: u-bb202 NEXCS: u-bbNNN ARCHER: u-bb210
Run-time (per model month) ~1 hour 30 minutes (XCS) ~1 hour 30 minutes ~1 hour 30 minutes ~1 hour 30 minutes
Cycling P1M in PT1H40M (XCS) P1M in PT1H40M P1M in PT1H40M
This could be changed to take advantage of the longer queues on NEXCS.		 P1M in PT1H40M
This could be changed to take advantage of the longer queues on ARCHER.
Estimated cost 216 node-hours/model year 216 node-hours/model year
or 117 kAU/model year equivalent		 117 kAU/model year
Decomposition 18EW x 24NS on 12 nodes (XCS: 36PPN) 18EW x 24NS on 12 nodes (36PPN) 18EW x 24NS on 12 nodes (36PPN) 24EW x 15NS on 15 nodes (24PPN)
Storage Requirements
(current STASH settings)		 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps) 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps)
MASS costs: £2.01 per model year		 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps)
copied to a JASMIN GWS as the model runs		 73.5GB per model year (32-bit pp-files & seasonal 64-bit dumps)
copied to the /nerc disk and a JASMIN GWS as the model runs
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