Difference between revisions of "UKCA Chemistry and Aerosol Tutorial 10"

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[[UKCA Chemistry and Aerosol Tutorials | Back to UKCA Chemistry and Aerosol Tutorials]]
 
 
==What you will learn in this Tutorial==
 
 
In this tutorial you will learn how the wet deposition of chemical species is handelled in UKCA. You will then add-in the wet deposition of one of your new tracers.
 
 
==Task 10.1: Add wet deposition of a species==
 
 
<span style="color:green">'''Task 10.1:''' Add in wet deposition for '''BOB''', using the following values:</span>
 
 
{| border="1"
 
! <math>\ k(298)\ </math> || <math>\ -\left({\Delta H}/R\right)\ </math> || <math>\ k(298)</math> for the 1st dissociation || <math>\ -\left({\Delta H}/R\right)</math> for the 1st dissociation || <math>\ k(298)</math> for the 2nd dissociation || <math>\ -\left({\Delta H}/R\right)</math> for the 2nd dissociation
 
|-
 
| <math>\ 0.21 \times 10^{+06}\ </math> || <math>\ 0.87 \times 10^{+04}\ </math> || <math>\ 0.2 \times 10^{+02}\ </math> || <math>\ 0.0\ </math> || <math>\ 0.0\ </math> || <math>\ 0.0\ </math>
 
|}
 
 
'''Note:''' If you were unable to successfully complete [[UKCA Chemistry and Aerosol Tutorial 9#Task 9.1: adding new dry deposition values|Task 9.1]], then please take a copy of the '''i''' job from the Tutorial experiment (''Tutorial: solution to Task 9.1 - add new dry deposition'') and work from there, as this will allow you to only make the changes required for this task. Please also make a new branch and merge-in branch '''branch''' at revision number '''rev''' to allow you to proceed.
 
 
==Adding Wet Deposition==
 
 
The formulation used in UKCA is described in Giannakopoulos (1999)[1]. This scheme uses the following formula to calculate the effective Henry's Law coefficient
 
 
<math>
 
H_{eff} = k\left(298\right) \exp \left(-\frac{\Delta H}{R}\left[\left(\frac{1}{T}\right) - \left(\frac{1}{298}\right)\right]\right)
 
</math>
 
 
where <math>k\left(298\right)</math> is the rate constant at 298K.
 
 
During this tutorial you will be tasked with adding the wet deposition of one of your new tracers.
 
 
'''References'''
 
# Giannakopoulos, C., M. P. Chipperfield, K. S. Law, and J. A. Pyle (1999), Validation and intercomparison of wet and dry deposition schemes using 210Pb in a global three-dimensional off-line chemical transport model, J. Geophys. Res., 104(D19), 23761–23784, doi:10.1029/1999JD900392.
 
 
==Turning on Wet Deposition for a Species==
 
 
===Chemistry Scheme Specification===
 
 
Within the UKCA code, whether a species is wet deposited or not is controlled in the '''ukca_chem_<span style="color:blue">scheme</span>.F90''' file. In the '''chch_defs_<span style="color:blue">scheme</span>''' array there are lines like
 
 
chch_t( 10,'HONO2 ', 1,'TR ',' ', 1, <span style="color:red">'''1'''</span>, 0), & ! 10 DD: 7,WD: 4,
 
chch_t( 11,'H2O2 ', 1,'TR ',' ', 1, <span style="color:red">'''1'''</span>, 0), & ! 11 DD: 8,WD: 5,
 
 
Where the <span style="color:red">'''1'''</span> in the 7th column turns on wet deposition of that species (being 0 otherwise). You will need to change the 0 to a '''1''' for the species that you wish to now wet deposit.
 
 
===Setting Henry's Law values===
 
 
In the '''ukca_chem_<span style="color:blue">scheme</span>.F90''' the parameters required to calculate <math>H_{eff}</math> are held in the '''henry_defs_<span style="color:blue">scheme</span>''' array, and has format
 
 
{| border="1"
 
| <math>\ k(298)\ </math> || <math>\ -\left({\Delta H}/R\right)\ </math> || <math>\ k(298)</math> for the 1st dissociation || <math>\ -\left({\Delta H}/R\right)</math> for the 1st dissociation || <math>\ k(298)</math> for the 2nd dissociation || <math>\ -\left({\Delta H}/R\right)</math> for the 2nd dissociation
 
|}
 
 
Columns 3 and 4 are used if the species dissociates in the aqueous phase. In this case, <math>H_{eff}</math> is further multiplied by a factor of
 
 
<math>
 
1+\frac{k(aq)}{H^{+}}
 
</math>
 
 
where
 
 
<math>
 
k(aq) = k\left(298\right) \exp \left(-\frac{\Delta H}{R}\left[\left(\frac{1}{T}\right) - \left(\frac{1}{298}\right)\right]\right)
 
</math>
 
 
and column 3 contains the values of <math>k(298)</math> and column 4 contains the value of <math>-{\Delta H}/R</math>. Similarly, if the species dissociates a second time then a further factor of <math>1+k(aq)/H^{+}</math> is applied, where this value of <math>k(aq)</math> is calculated from the values of <math>k(298)</math> and <math>-{\Delta H}/R</math> in columns 5 and 6.
 
 
'''Note:''' As with the 2D dry deposition values in '''depvel_defs_<span style="color:blue">scheme</span>''', the order of '''henry_defs_<span style="color:blue">scheme</span>''' also assumes that the values are in the same order as the species (that wet deposit) in the '''chch_defs_<span style="color:blue">scheme</span>''' array.
 
 
Examples for this array are
 
 
0.2100E+06, 0.8700E+04, 0.2000E+02, 0.0000E+00, 0.0000E+00, 0.0000E+00,& ! 4 HONO2
 
0.8300E+05, 0.7400E+04, 0.2400E-11,-0.3730E+04, 0.0000E+00, 0.0000E+00,& ! 5 H2O2
 
 
===Increase the value of JPDW===
 
 
Similar to when adding dry deposition of a species you will need to increase the size of the '''JPDW''' counter. This is done with a hand-edit, the value of '''JPDW''' being set in the '''CNTLATM''' file in your <tt>$HOME/umui_jobs/<span style="color:blue">jobid</span></tt> directory.
 
 
==Solution to Task 10.1: Add wet deposition of a species==
 
 
Please see [[Solution to UKCA Chemistry and Aerosol Tutorial 10 Task 10.1 |this page]] for a solution of [[#Task 10.1: Add wet deposition of a species|Task 10.1]].
 
 
----
 
''Written by [[User:Nla27 | Luke Abraham]] 2014''
 

Revision as of 17:12, 25 February 2014