https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&feed=atom&action=history
UKCA Chemistry and Aerosol vn10.4 Tutorial 4 - Revision history
2024-03-29T12:26:02Z
Revision history for this page on the wiki
MediaWiki 1.35.13
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5654&oldid=prev
Nla27: /* Numerical Noise */
2016-12-22T11:12:25Z
<p><span dir="auto"><span class="autocomment">Numerical Noise</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:12, 22 December 2016</td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===Numerical Noise===</div></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><gallery></div></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><gallery<ins class="diffchange diffchange-inline"> widths=300px heights=300px</ins>></div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Image:ALICE_noise.png|Numerical noise in the ALICE tracer (s34i064)</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Image:ALICE_noise.png|Numerical noise in the ALICE tracer (s34i064)</div></td>
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<tr>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Image:BOB_noise.png|Numerical noise in the BOB tracer (s34i065)</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Image:BOB_noise.png|Numerical noise in the BOB tracer (s34i065)</div></td>
</tr>
</table>
Nla27
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5628&oldid=prev
Nla27: /* STASHmaster_A */
2016-12-21T17:51:49Z
<p><span dir="auto"><span class="autocomment">STASHmaster_A</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:51, 21 December 2016</td>
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<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<span style="color:red">000000000000000000000000111110</span>:''' These are ''Options Codes'' which determine which scheme the STASH field (i.e. tracer in this case) are valid for. These are counted from the '''right''', '''''n1''''' to '''''n30''''', and for UKCA only the first 8 are used. These have the following meaning:</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<span style="color:red">000000000000000000000000111110</span>:''' These are ''Options Codes'' which determine which scheme the STASH field (i.e. tracer in this case) are valid for. These are counted from the '''right''', '''''n1''''' to '''''n30''''', and for UKCA only the first 8 are used. These have the following meaning:</div></td>
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<tr>
<td class="diff-marker">−</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** '''n1:''' Age-of-air tracer<del class="diffchange diffchange-inline"> only</del> (''ageair'')</div></td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** '''n1:''' Age-of-air tracer (''ageair'')<ins class="diffchange diffchange-inline"> or aerosol tracers</ins></div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''n2:''' Standard Tropospheric Chemistry scheme using the Backward Euler solver (''trop'')</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''n2:''' Standard Tropospheric Chemistry scheme using the Backward Euler solver (''trop'')</div></td>
</tr>
<tr>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''n3:''' Regional Air Quality Chemistry scheme using the Backward Euler solver (''raq'')</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''n3:''' Regional Air Quality Chemistry scheme using the Backward Euler solver (''raq'')</div></td>
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</table>
Nla27
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5611&oldid=prev
Nla27 at 16:41, 21 December 2016
2016-12-21T16:41:52Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:41, 21 December 2016</td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===Numerical Noise===</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===Numerical Noise===</div></td>
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<td colspan="2" class="diff-empty"> </td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"></td>
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<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><gallery></div></td>
</tr>
<tr>
<td colspan="2" class="diff-empty"> </td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Image:ALICE_noise.png|Numerical noise in the ALICE tracer (s34i064)</div></td>
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<tr>
<td colspan="2" class="diff-empty"> </td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Image:BOB_noise.png|Numerical noise in the BOB tracer (s34i065)</div></td>
</tr>
<tr>
<td colspan="2" class="diff-empty"> </td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></gallery></div></td>
</tr>
<tr>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>When your suite has run successfully, and you view the fields for your new tracer(s) in Xconv, you may find that they have a speckled appearance, rather than being constant. This is due to numerical noise that has been introduced as the tracer is run through the UKCA chemical solver. Once the field is converted to 32-bit this should disappear. It will also cease to become apparent when emissions and reactions are applied to these tracers.</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>When your suite has run successfully, and you view the fields for your new tracer(s) in Xconv, you may find that they have a speckled appearance, rather than being constant. This is due to numerical noise that has been introduced as the tracer is run through the UKCA chemical solver. Once the field is converted to 32-bit this should disappear. It will also cease to become apparent when emissions and reactions are applied to these tracers.</div></td>
</tr>
</table>
Nla27
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5584&oldid=prev
Nla27: /* Solution to Task 4.1 */
2016-12-15T16:49:00Z
<p><span dir="auto"><span class="autocomment">Solution to Task 4.1</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:49, 15 December 2016</td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> 4 : 192 144 85 1 Field code = 2165</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> 4 : 192 144 85 1 Field code = 2165</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Sample output from this task can be found <del class="diffchange diffchange-inline">in</del> '''<code>/work/n02/n02/ukca/Tutorial/vn10.4/sample_output/Task4.1</code>''' on ARCHER.</div></td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Sample output from this task can be found <ins class="diffchange diffchange-inline">at</ins> '''<code>/work/n02/n02/ukca/Tutorial/vn10.4/sample_output/Task4.1<ins class="diffchange diffchange-inline">/ai084a.pk19880901</ins></code>''' on ARCHER.</div></td>
</tr>
<tr>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
</tr>
<tr>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[UKCA Chemistry and Aerosol vn10.4 Tutorial 5|Tutorial 5]]</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[UKCA Chemistry and Aerosol vn10.4 Tutorial 5|Tutorial 5]]</div></td>
</tr>
</table>
Nla27
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5527&oldid=prev
Nla27 at 15:33, 14 December 2016
2016-12-14T15:33:51Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:33, 14 December 2016</td>
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<td colspan="2" class="diff-lineno">Line 718:</td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Sample output from this task can be found in '''<code>/work/n02/n02/ukca/Tutorial/vn10.4/sample_output/Task4.1</code>''' on ARCHER.</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Sample output from this task can be found in '''<code>/work/n02/n02/ukca/Tutorial/vn10.4/sample_output/Task4.1</code>''' on ARCHER.</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[UKCA Chemistry and Aerosol vn10.4 Tutorial 5|Tutorial 5]]</div></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>----</div></td>
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<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''Written by [[User:Nla27 | Luke Abraham]] 2016''</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''Written by [[User:Nla27 | Luke Abraham]] 2016''</div></td>
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Nla27
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5523&oldid=prev
Nla27: /* Run your suite */
2016-12-14T15:31:23Z
<p><span dir="auto"><span class="autocomment">Run your suite</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:31, 14 December 2016</td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> log/job/'''X'''/'''[JOB NAME]'''/NN</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td class="diff-marker">−</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>(where X will be either ''19880901T0000Z'' on ARCHER, or may be ''1'' if you are using a vn10.6 suite based on a Rose stem testing job) and view the job.err or job.out files. When the suite successfully runs, the fieldsfile output can be found in</div></td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>(where X will be either ''19880901T0000Z'' on ARCHER, or may be ''1'' if you are using a vn10.6 suite based on a Rose stem testing job) and view the job.err or job.out files. When the suite successfully runs, the fieldsfile output can<ins class="diffchange diffchange-inline"> usually</ins> be found in</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> $HOME/'''[your ARCHER userid]'''/cylc-run/'''[SUITE-ID]'''/share/data/History_Data</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> $HOME/'''[your ARCHER userid]'''/cylc-run/'''[SUITE-ID]'''/share/data/History_Data</div></td>
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Nla27
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5522&oldid=prev
Nla27: /* ukca_chem_scheme.F90 */
2016-12-14T15:28:47Z
<p><span dir="auto"><span class="autocomment">ukca_chem_scheme.F90</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:28, 14 December 2016</td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<code><span style="color:red">'SPECIES&nbsp;&nbsp;&nbsp;'</span></code>''' is the name of the species, e.g. <tt>'O3&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt></div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<code><span style="color:red">'SPECIES&nbsp;&nbsp;&nbsp;'</span></code>''' is the name of the species, e.g. <tt>'O3&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt></div></td>
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<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<code>X</code>''' number of odd atoms</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<code>X</code>''' number of odd atoms</div></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* '''<code><span style="color:green">'TYPE&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</span></code>''' describes whether the species is a tracer (<tt>'TR&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt>), a steady-state species (<tt>'SS&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt>), a constant (<tt>'CT&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt>), or a constant field (<tt>'<del class="diffchange diffchange-inline">CT</del>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt>). For SS, CT, and CF, special code will need to be added.</div></td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* '''<code><span style="color:green">'TYPE&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</span></code>''' describes whether the species is a tracer (<tt>'TR&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt>), a steady-state species (<tt>'SS&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt>), a constant (<tt>'CT&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt>), or a constant field (<tt>'<ins class="diffchange diffchange-inline">CF</ins>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;'</tt>). For SS, CT, and CF, special code will need to be added.</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<code><span style="color:blue">'FAMILY&nbsp;&nbsp;&nbsp;&nbsp;'</span></code>''' is the family that the species belongs to. This field is not currently used.</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<code><span style="color:blue">'FAMILY&nbsp;&nbsp;&nbsp;&nbsp;'</span></code>''' is the family that the species belongs to. This field is not currently used.</div></td>
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<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<code>D</code>''' is '''1''' if the species is dry-deposited, and '''0''' otherwise.</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* '''<code>D</code>''' is '''1''' if the species is dry-deposited, and '''0''' otherwise.</div></td>
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</table>
Nla27
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5521&oldid=prev
Nla27: /* Initialise your new tracer(s) */
2016-12-14T15:26:51Z
<p><span dir="auto"><span class="autocomment">Initialise your new tracer(s)</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:26, 14 December 2016</td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===Initialise your new tracer(s)===</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===Initialise your new tracer(s)===</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Your new tracer(s) is a prognostic variable, as therefore the UM requires prior knowledge of the values it has to be able to run properly. To do this you need to go to ''um <math>\rightarrow</math> namelist <math>\rightarrow</math> Reconfiguration and Ancillary Control <math>\rightarrow</math> Configure ancils and initialise dump fields''. Here you will see a list of fields. You can change the order of these by e.g. STASH number, as this often makes it easier to view.</div></td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Your new tracer(s) is a prognostic variable, as therefore the UM requires prior knowledge of the values it has to be able to run properly. To do this you need to go to <ins class="diffchange diffchange-inline">'</ins>''um <math>\rightarrow</math> namelist <math>\rightarrow</math> Reconfiguration and Ancillary Control <math>\rightarrow</math> Configure ancils and initialise dump fields<ins class="diffchange diffchange-inline">'</ins>''. Here you will see a list of fields. You can change the order of these by e.g. STASH number, as this often makes it easier to view.</div></td>
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<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
</tr>
<tr>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>To add new fields, right click anywhere within the table and click '''Add new section'''. This will make a new entry with index '''1''', if you add another entry, it will be given index '''2''' etc.. Right-click on this and click on '''View namelist:items(''X'')''' (where '''''X''''' is the index number). This will open a new tab where you can select the STASH section and item for the field you want to initialise using the drop-down menus. Some UKCA tracers need to be given full 3D initial conditions in ancillary file format. However, for this example we will initialise the tracer to a small number, <math>1.000000 \times 10^{-12}</math>. To do this, select the radio button for '''Set to a specified constant value''' and put '''1.000000e-12''' in the dialog box labelled '''user_prog_rconst''' at the bottom of the panel.</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>To add new fields, right click anywhere within the table and click '''Add new section'''. This will make a new entry with index '''1''', if you add another entry, it will be given index '''2''' etc.. Right-click on this and click on '''View namelist:items(''X'')''' (where '''''X''''' is the index number). This will open a new tab where you can select the STASH section and item for the field you want to initialise using the drop-down menus. Some UKCA tracers need to be given full 3D initial conditions in ancillary file format. However, for this example we will initialise the tracer to a small number, <math>1.000000 \times 10^{-12}</math>. To do this, select the radio button for '''Set to a specified constant value''' and put '''1.000000e-12''' in the dialog box labelled '''user_prog_rconst''' at the bottom of the panel.</div></td>
</tr>
</table>
Nla27
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5520&oldid=prev
Nla27: /* Help text */
2016-12-14T15:25:56Z
<p><span dir="auto"><span class="autocomment">Help text</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:25, 14 December 2016</td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> [stashmaster:code(51064)]</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> [stashmaster:code(51064)]</div></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> description=ALICE MASS <del class="diffchange diffchange-inline">MIXING</del> RATIO <del class="diffchange diffchange-inline">AFTER</del> <del class="diffchange diffchange-inline">TIMESTEP</del></div></td>
<td class="diff-marker">+</td>
<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> description=ALICE<ins class="diffchange diffchange-inline"> </ins> MASS <ins class="diffchange diffchange-inline">MIX</ins> RATIO <ins class="diffchange diffchange-inline">ON PRESS</ins> <ins class="diffchange diffchange-inline">LEVS</ins></div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> help=UKCA Tutiorial Tracer ALICE Mass Mixing Ratio in kg/kg(Air)</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> help=UKCA Tutiorial Tracer ALICE Mass Mixing Ratio in kg/kg(Air)</div></td>
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<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> =on pressure levels</div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> =on pressure levels</div></td>
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Nla27
https://www.ukca.ac.uk/wiki/index.php?title=UKCA_Chemistry_and_Aerosol_vn10.4_Tutorial_4&diff=5519&oldid=prev
Nla27: /* STASHmaster_A */
2016-12-14T15:23:13Z
<p><span dir="auto"><span class="autocomment">STASHmaster_A</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:23, 14 December 2016</td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><span style="color:green">'''Remember:''' You need to add '''2''' tracers, ALICE in s34i064 and BOB in s34i065.</span></div></td>
<td class="diff-marker"> </td>
<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><span style="color:green">'''Remember:''' You need to add '''2''' tracers, ALICE in s34i064 and BOB in s34i065.</span></div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>You should make these changes to STASHmaster_A, and then '''<code>fcm commit</code>''' these changes. This is important, otherwise ARCHER will not be able to see the changes you have made.</div></td>
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<td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>You should make these changes to STASHmaster_A, and then '''<code>fcm commit</code>''' these changes. This is important, otherwise ARCHER will not be able to see the changes you have made<ins class="diffchange diffchange-inline"> once you have included your new STASHmaster_A file in Rose</ins>.</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>====Section 51====</div></td>
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<td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>====Section 51====</div></td>
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Nla27